correspondenceEdges

<code>correspondenceEdges</code> takes edges numbers on an input tree, and gives back
their corresponding numbers on the output tree.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

correspondenceEdges function

<dl><dt>edges</dt>
<dd>vector of index of edges in the tree "from"</dd>
<dt>from</dt>
<dd>initial input tree (format "<code>phylo</code>")</dd>
<dt>to</dt>
<dd>aimed output tree (format "<code>phylo</code>")</dd></dl>

Arguments

Correspondence between edges numbers — correspondenceEdges

<dl>

<dt>edges</dt>
<dd>vector of index of edges in the tree "from"</dd>


<dt>from</dt>
<dd>initial input tree (format "<code>phylo</code>")</dd>


<dt>to</dt>
<dd>aimed output tree (format "<code>phylo</code>")</dd>

</dl>

correspondenceEdges: Correspondence between edges numbers

Description

Usage

Value

Arguments