extract.equivalent_shifts

<code>extract.equivalent_shifts</code> takes an object of class
<code>equivalent_shifts</code>, result of function <code>equivalent_shifts</code>,
and returns the shifts of root values for a given trait.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

extract.equivalent_shifts function

<dl><dt>x</dt>
<dd>an object of class <code>equivalent_shifts</code>, result of
function <code>equivalent_shifts</code></dd>
<dt>trait</dt>
<dd>the number of the trait to be extracted. Default to 1.</dd>
<dt>what</dt>
<dd>one of "shifts_values" or "root_values".</dd>
<dt>...</dt>
<dd>unused.</dd></dl>

Arguments

Extract the shifts values for one trait. — extract.equivalent_shifts

<dl>

<dt>x</dt>
<dd>an object of class <code>equivalent_shifts</code>, result of
function <code>equivalent_shifts</code></dd>


<dt>trait</dt>
<dd>the number of the trait to be extracted. Default to 1.</dd>


<dt>what</dt>
<dd>one of "shifts_values" or "root_values".</dd>


<dt>...</dt>
<dd>unused.</dd>

</dl>

extract.equivalent_shifts: Extract the shifts values for one trait.

Description

Usage

Value

Arguments

See Also