extract.parsimonyCost

<code>extract.parsimonyCost</code> takes an object of class "<code>parsimonyCost</code>",
result of function <code>parsimonyCost</code>, and computes the minimum cost
at the given node.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

extract.parsimonyCost function

<dl><dt>x</dt>
<dd>an object of class "<code>parsimonyCost</code>", result of function
<code>parsimonyCost</code>.</dd>
<dt>node</dt>
<dd>the root node of the subtree. By default, the root of the tree.</dd>
<dt>...</dt>
<dd>unused</dd></dl>

Arguments

Extraction of the actual number of solutions. — extract.parsimonyCost

<dl>

<dt>x</dt>
<dd>an object of class "<code>parsimonyCost</code>", result of function
<code>parsimonyCost</code>.</dd>


<dt>node</dt>
<dd>the root node of the subtree. By default, the root of the tree.</dd>


<dt>...</dt>
<dd>unused</dd>

</dl>

extract.parsimonyCost: Extraction of the actual number of solutions.

Description

Usage

Value

Arguments

See Also