extract.simul_process

<code>extract.simul_process</code> takes an object of class "<code>simul_process</code>",
result of function <code>simul_process</code>, and extracts the traits values, 
expectations or optimal values at the tips or the internal nodes.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

extract.simul_process function

<dl><dt>x</dt>
<dd>an object of class "<code>simul_process</code>", result of function
<code>simul_process</code>.</dd>
<dt>where</dt>
<dd>one of "tips" (the default) or "nodes". Where to extract the results.</dd>
<dt>what</dt>
<dd>one of "states" (the default), "expectation", or "optimal.values".</dd>
<dt>...</dt>
<dd>unused</dd></dl>

Arguments

Extraction of simulated traits — extract.simul_process

<dl>

<dt>x</dt>
<dd>an object of class "<code>simul_process</code>", result of function
<code>simul_process</code>.</dd>


<dt>where</dt>
<dd>one of "tips" (the default) or "nodes". Where to extract the results.</dd>


<dt>what</dt>
<dd>one of "states" (the default), "expectation", or "optimal.values".</dd>


<dt>...</dt>
<dd>unused</dd>

</dl>

extract.simul_process: Extraction of simulated traits

Description

Usage

Value

Arguments

Details

See Also