find_rotation

<code>find_rotation</code> takes two fits from from <code>PhyloEM</code>,
and test if their datasets are equal up to a rotation.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

find_rotation function

<dl><dt>res1</dt>
<dd>an object of class <code>PhyloEM</code>.</dd>
<dt>res2</dt>
<dd>an object of class <code>PhyloEM</code>.</dd>
<dt>tol</dt>
<dd>relative numerical tolerance. Default to <code>.Machine$double.eps^(0.5)</code>.</dd></dl>

Arguments

Test for rotation invariant datasets — find_rotation

<dl>

<dt>res1</dt>
<dd>an object of class <code>PhyloEM</code>.</dd>


<dt>res2</dt>
<dd>an object of class <code>PhyloEM</code>.</dd>


<dt>tol</dt>
<dd>relative numerical tolerance. Default to <code>.Machine$double.eps^(0.5)</code>.</dd>

</dl>

find_rotation: Test for rotation invariant datasets

Description

Usage

Value

Arguments