go_back_to_original_process

<code>go_back_to_original_process</code> takes the inferred parameters with a BM
on a rescaled tree, and gives back the equivalent parameters of the OU on 
the original process.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

go_back_to_original_process function

<dl><dt>phy_original</dt>
<dd>the original phylogenetic tree</dd>
<dt>known.selection.strength</dt>
<dd>the known selection strength of the original
OU.</dd>
<dt>sBM_variance</dt>
<dd>boolean. Is the root random ?</dd>
<dt>params</dt>
<dd>the inferred parameters of the BM on the re-scaled tree.</dd></dl>

Arguments

Scale the parameters back to the original process — go_back_to_original_process

<dl>

<dt>phy_original</dt>
<dd>the original phylogenetic tree</dd>


<dt>known.selection.strength</dt>
<dd>the known selection strength of the original
OU.</dd>


<dt>sBM_variance</dt>
<dd>boolean. Is the root random ?</dd>


<dt>params</dt>
<dd>the inferred parameters of the BM on the re-scaled tree.</dd>

</dl>

go_back_to_original_process: Scale the parameters back to the original process

Description

Usage

Value

Arguments