incidence.matrix.full

<code>incidence.matrix.full</code> computes the incidence matrix U of a tree : for a 
node i and a branch b, U[i,b]=1 if b is in the lineage i, and 0 
otherwise.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

incidence.matrix.full function

<dl><dt>phylo</dt>
<dd>a phylogenetic tree, class <code>phylo</code>.</dd></dl>

Arguments

Incidence matrix of a tree. — incidence.matrix.full

<dl>

<dt>phylo</dt>
<dd>a phylogenetic tree, class <code>phylo</code>.</dd>

</dl>

incidence.matrix.full: Incidence matrix of a tree.

Description

Usage

Value

Arguments

See Also