init.allocate_regimes_from_shifts

<code>init.allocate_regimes_from_shifts</code> initialize the vector of regimes 
at nodes and tips, with the regime (0) at the root.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

init.allocate_regimes_from_shifts function

<dl><dt>phy</dt>
<dd>Input tree.</dd></dl>

Arguments

Initialization for the allocation of shifts. — init.allocate_regimes_from_shifts

<dl>

<dt>phy</dt>
<dd>Input tree.</dd>

</dl>

init.allocate_regimes_from_shifts: Initialization for the allocation of shifts.

Description

Usage

Value

Arguments

Details