init.enumerate_parsimony

<code>init.enumerate_parsimony</code> is used in function <code>enumerate_parsimony</code>, 
and initialize the correct data structure.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

init.enumerate_parsimony function

<dl><dt>phy</dt>
<dd>Input tree.</dd>
<dt>clusters</dt>
<dd>a vector representing the group of each tip.</dd></dl>

Arguments

Initialization for the enumeration of parsimonious solutions. — init.enumerate_parsimony

<dl>

<dt>phy</dt>
<dd>Input tree.</dd>


<dt>clusters</dt>
<dd>a vector representing the group of each tip.</dd>

</dl>

init.enumerate_parsimony: Initialization for the enumeration of parsimonious solutions.

Description

Usage

Value

Arguments

Details