init.incidence.matrix.full

<code>init.incidence.matrix.full</code> initialize the matrix updated in
<code>update.incidence.matrix.full</code> for the computation of the incidence
 matrix of the full tree in <code>incidence.matrix.full</code>.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

init.incidence.matrix.full function

<dl><dt>phy</dt>
<dd>Input tree.</dd></dl>

Arguments

Initialization for incidence matrix (full tree) — init.incidence.matrix.full

<dl>

<dt>phy</dt>
<dd>Input tree.</dd>

</dl>

init.incidence.matrix.full: Initialization for incidence matrix (full tree)

Description

Usage

Value

Arguments

Details