plot.enumerate_parsimony

<code>plot.enumerate_parsimony</code> plots a representation of all the equivalent
solutions.

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

plot.enumerate_parsimony function

<dl><dt>x</dt>
<dd>an object of class <code>enumerate_parsimony</code>, result of
function <code>enumerate_parsimony</code></dd>
<dt>numbering</dt>
<dd>whether to number the solutions. Default to FALSE.</dd>
<dt>nbr_col</dt>
<dd>the number of columns on which to display the plot.
Default to 3.</dd>
<dt>...</dt>
<dd>further arguments to be passed to <code>plot.phylo</code> or 
<code>nodelabels</code>.</dd></dl>

Arguments

Plot all the equivalent solutions. — plot.enumerate_parsimony

<dl>

<dt>x</dt>
<dd>an object of class <code>enumerate_parsimony</code>, result of
function <code>enumerate_parsimony</code></dd>


<dt>numbering</dt>
<dd>whether to number the solutions. Default to FALSE.</dd>


<dt>nbr_col</dt>
<dd>the number of columns on which to display the plot.
Default to 3.</dd>


<dt>...</dt>
<dd>further arguments to be passed to <code>plot.phylo</code> or 
<code>nodelabels</code>.</dd>

</dl>

plot.enumerate_parsimony: Plot all the equivalent solutions.

Description

Usage

Value

Arguments

Details

See Also