segmentation.BM

<code>segmentation.BM</code> performs the segmentation algorithm described.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

segmentation.BM function

<dl><dt>nbr_of_shifts</dt>
<dd>Number of shifts on the phylogeny allowed</dd>
<dt>costs0</dt>
<dd>Cost of each edge</dd>
<dt>diff_exp</dt>
<dd>Difference of expectations</dd></dl>

Arguments

Segmentation in the BM case — segmentation.BM

<dl>

<dt>nbr_of_shifts</dt>
<dd>Number of shifts on the phylogeny allowed</dd>


<dt>costs0</dt>
<dd>Cost of each edge</dd>


<dt>diff_exp</dt>
<dd>Difference of expectations</dd>

</dl>

segmentation.BM: Segmentation in the BM case

Description

Usage

Value

Arguments

Details