shifts.list_to_matrix

<code>shifts.list_to_matrix</code> takes the list description of the shifts 
to give the matrix representation of the shifts : the b th element of 
the lth line has the value of the shift on character l occurring on that branch b

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

shifts.list_to_matrix function

<dl><dt>phy</dt>
<dd>Input tree.</dd>
<dt>shifts</dt>
<dd>list description of the shifts : shifts$edges, shifts$values.</dd>
<dt>p</dt>
<dd>number of traits (optional, needed when shifts = NULL).</dd></dl>

Arguments

Compute the matrix of shifts. — shifts.list_to_matrix

<dl>

<dt>phy</dt>
<dd>Input tree.</dd>


<dt>shifts</dt>
<dd>list description of the shifts : shifts$edges, shifts$values.</dd>


<dt>p</dt>
<dd>number of traits (optional, needed when shifts = NULL).</dd>

</dl>

shifts.list_to_matrix: Compute the matrix of shifts.

Description

Usage

Value

Arguments

See Also