shifts.list_to_vector

<code>shifts.list_to_vector</code> takes the list description of the shifts 
to give the vectorial representation of the shifts : the b th element of 
the vector has the value of the shift occurring on that branch b.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

shifts.list_to_vector function

<dl><dt>phy</dt>
<dd>Input tree.</dd>
<dt>shifts</dt>
<dd>: list description of the shifts : shifts$edges, shifts$values</dd></dl>

Arguments

Compute the vector of shifts. — shifts.list_to_vector

<dl>

<dt>phy</dt>
<dd>Input tree.</dd>


<dt>shifts</dt>
<dd>: list description of the shifts : shifts$edges, shifts$values</dd>

</dl>

shifts.list_to_vector: Compute the vector of shifts.

Description

Usage

Value

Arguments

See Also