test.root.state

<code>test.root.state</code> test whether the parameters of root.state given
by the user are coherent. If not, it returns a new corrected list to
define root.state.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

test.root.state function

<dl><dt>root.state</dt>
<dd>A list giving the root state</dd>
<dt>process</dt>
<dd>"BM", "OU" or "scOU"</dd>
<dt>...</dt>
<dd>parameters of the process (if OU)</dd></dl>

Arguments

Test state of root. — test.root.state

<dl>

<dt>root.state</dt>
<dd>A list giving the root state</dd>


<dt>process</dt>
<dd>"BM", "OU" or "scOU"</dd>


<dt>...</dt>
<dd>parameters of the process (if OU)</dd>

</dl>

test.root.state: Test state of root.

Description

Usage

Value

Arguments

Details