update.allocate_regimes_from_shifts

<code>update.allocate_regimes_from_shifts</code> computes the regime of a daughter 
node, knowing the regime at the parent node and the vector of shifts positions

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

update.allocate_regimes_from_shifts function

<dl><dt>edgeNbr</dt>
<dd>: Number of the edge considered</dd>
<dt>ancestral</dt>
<dd>: regime of the parent node</dd>
<dt>shifts_edges</dt>
<dd>positions on edges</dd></dl>

Arguments

Update function for regime allocation. — update.allocate_regimes_from_shifts

<dl>

<dt>edgeNbr</dt>
<dd>: Number of the edge considered</dd>


<dt>ancestral</dt>
<dd>: regime of the parent node</dd>


<dt>shifts_edges</dt>
<dd>positions on edges</dd>

</dl>

update.allocate_regimes_from_shifts: Update function for regime allocation.

Description

Usage

Value

Arguments

Details