update.compute_betas_from_shifts

<code>update.compute_betas_from_shifts</code> computes the optimal value at a daughter node, 
knowing the optimal value at the parent node and the vector of shifts.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

update.compute_betas_from_shifts function

<dl><dt>edgeNbr</dt>
<dd>: Number of the edge considered</dd>
<dt>ancestral</dt>
<dd>: Computed vector for the parental node</dd>
<dt>shifts</dt>
<dd>position and values of the shifts</dd></dl>

Arguments

Update function for optimal value computation — update.compute_betas_from_shifts

<dl>

<dt>edgeNbr</dt>
<dd>: Number of the edge considered</dd>


<dt>ancestral</dt>
<dd>: Computed vector for the parental node</dd>


<dt>shifts</dt>
<dd>position and values of the shifts</dd>

</dl>

update.compute_betas_from_shifts: Update function for optimal value computation

Description

Usage

Value

Arguments

Details