update.incidence.matrix.full

<code>update.incidence.matrix.full</code> updates the matrix initialized in 
<code>init.incidence.matrix.full</code> for the computation of the incidence matrix
in <code>incidence.matrix.full</code>.

internal

Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.

Paul Bastide

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

Mahendra Mariadassou

update.incidence.matrix.full function

<dl><dt>daughtersParams</dt>
<dd>: rows of updated matrix corresponding to the
daughters of the current node.</dd></dl>

Arguments

Update function for incidence matrix — update.incidence.matrix.full

<dl>

<dt>daughtersParams</dt>
<dd>: rows of updated matrix corresponding to the
daughters of the current node.</dd>

</dl>

update.incidence.matrix.full: Update function for incidence matrix

Description

Usage

Value

Arguments

Details