Plasmidprofiler (version 0.1.6)

amr_positives: Identify Antimicrobial Resistance Positive Plasmids from Blast Results

Description

This function loads the imported blast results, identifies which plasmids carry AMR genes at highest identity. May have issues with multiple genes per plasmid, currently optimized for identifying one of two genes

Usage

amr_positives(blast.results)

Arguments

blast.results

Blast results loaded from read_blast or from Global Env

Value

Two column DF of plasmid names and genes present

Examples

## Not run: 
# amr_positives(blastdata)
# ## End(Not run)