Plasmidprofiler (version 0.1.6)

blast_parser: Blast Results Parser Function

Description

Loads the imported blast results, extracts desired columns, Create new column of ratio between hit length to query length - higher as denominator, adjusts pID by this ratio. Any AMR results are removed from the returned df.

Usage

blast_parser(blast.results)

Arguments

blast.results

Blast results loaded from read_blast or Global Env

Value

Blast table with pID adjusted by ratio of hit length to query length (larger as denominator)

Examples

## Not run: 
# blast_parser(blastdata)
# ## End(Not run)