Plasmidprofiler (version 0.1.6)

combine_results: Combines SRST2 and Blast results into a single dataframe

Description

Combines blast and SRST2 results, cuts to desired columns (Sample, Plasmid, Inc_group, Coverage, Divergence, Length, Clusterid), matches plasmids to BR and appends simplified INC names, all future modifications are done to this dataframe

Usage

combine_results(sr, br)

Arguments

sr

SRST2 results loaded from read_srst2

br

Blast results parsed by blast_parser

Value

Seven column dataframe of SRST2 results now including INC groups

Examples

## Not run: 
# combine_results(example_srst2_results, example_blast_results)
# ## End(Not run)