order_report

Dataframe of results produced by <code><a rd-options="" href="/link/subsampler?package=Plasmidprofiler&version=0.1.6" data-mini-rdoc="Plasmidprofiler::subsampler">subsampler</a></code> or <code><a rd-options="" href="/link/combine_results?package=Plasmidprofiler&version=0.1.6" data-mini-rdoc="Plasmidprofiler::combine_results">combine_results</a></code>

report

Flag to anything other than NA to replace plasmid and sample names with generic names

anonymize


Order the report first by sample order (tree), then by incompatibility group, then by sureness on each plasmid


Contains functions developed to combine the results of querying a plasmid database using
short-read sequence typing with the results of a blast analysis against the query results.

Adrian Zetner

Plasmidprofiler

Visualization of Plasmid Profile Results

order_report function

Dataframe of results produced by <code><a rd-options='' href='subsampler'>subsampler</a></code> or <code><a rd-options='' href='combine_results'>combine_results</a></code>

order_report: Order the Report

Description

Usage

Arguments

Value

See Also

Examples