srst2data

datasets

Contains functions developed to combine the results of querying a plasmid database using
short-read sequence typing with the results of a blast analysis against the query results.

Adrian Zetner

Plasmidprofiler

Visualization of Plasmid Profile Results

srst2data function

Format

Strains graciously provided by the authors of the following papers:
Complete Genome and Plasmid Sequences of Three Canadian Isolates of
Salmonella enterica subsp. enterica Serovar Heidelberg from Human
and Food Sources. 2016 Labbe et al.
PMID: 26769926 Complete Sequence of Four Multidrug-Resistant MOBQ1 Plasmids Harboring
blaGES-5 Isolated from Escherichia coli and Serratia marcescens
Persisting in a Hospital in Canada. 2015 Boyd et al.
PMID: 25545311 Colistin-Nonsusceptible Pseudomonas aeruginosa Sequence Type 654 with
blaNDM-1 Arrives in North America. 2016 Mataseje et al.
PMID: 26824951

srst2data: Example Table of SRST2 Results

Description

Usage

Arguments

Format

Source

References

Examples