small_vgm

<p>Small VDJ GEX matrix (VGM) for function testing purposes</p>

datasets

We present 'Platypus', an open-source software platform providing a user-friendly interface to investigate B-cell receptor and T-cell receptor repertoires from scSeq experiments. 'Platypus' provides a framework to automate and ease the analysis of single-cell immune repertoires while also incorporating transcriptional information involving unsupervised clustering, gene expression and gene ontology. This R version of 'Platypus' is part of the 'ePlatypus' ecosystem for computational analysis of immunogenomics data: Yermanos et al. (2021) <doi:10.1093/nargab/lqab023>, Cotet et al. (2023) <doi:10.1093/bioinformatics/btad553>.

Alexander Yermanos

Platypus

Single-Cell Immune Repertoire and Gene Expression Analysis

Andreas Agrafiotis

Victor Kreiner

Tudor-Stefan Cotet

Raphael Kuhn

Danielle Shlesinger

Jiami Han

Vittoria Martinolli D'Arcy

Lucas Stalder

Daphne van Ginneken

small_vgm function

<p>An object of class <code>list</code> of length 5.</p>

Format

Small VDJ GEX matrix (VGM) for function testing purposes — small_vgm

Small VDJ GEX matrix (VGM) for function testing purposes

small_vgm: Small VDJ GEX matrix (VGM) for function testing purposes

Description

Usage

Arguments

Format

References