demo_snpdos

<p>A data.frame with the allele dosages for 30 SNPs in 661
samples; used in vignette, stored in PolyHaplotyper_demo.RData</p>

datasets

Infer the genetic composition of individuals
in terms of haplotype dosages for a haploblock, based
on bi-allelic marker dosages, for any ploidy level.
Reference: Voorrips and Tumino: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data.
Submitted to BMC Bioinformatics (2021).

Roeland Voorrips

PolyHaplotyper

Assignment of Haplotypes Based on SNP Dosages in Diploids and
Polyploids

demo_snpdos function

<p>a data.frame with 30 rows (SNPs) and 663 columns. The first
two columns contain the SNP name and contig; the remaining columns
contain the allele dosages (integers in 0..6 or NA) of the SNPs in
661 samples</p>

demo_snpdos: dosages of SNP alleles

Description

Arguments

Format