batchconvertjack(ndigit = 3, rm.loci)convertjack to do file conversion.
Input file must end with the extension '.gen'. Make sure to follow standard Genepop format for input file. The IDs of all individuals should be immediately followed by a comma. Population labels should be Pop, POP, or pop. There should not be invisible characters (tabs or spaces) at the end of lines, especially lines on which population labels are found. These lines should have only three characters (Pop). See example file 'glyptemys3.gen' if needed.
The option to remove loci from the output files can be extremely useful in simulation studies, in order to assess the influence of certain markers or estimate confidence intervals with jackkniffing procedures. Among others, Easypop generates Genepop files that could be processed with this function.