jackmsat

table

interval

nrepet

richness

Please see <code><a href="/link/jackmsatpop?package=PopGenKit&version=1.0" rd-options="" data-mini-rdoc="PopGenKit::jackmsatpop">jackmsatpop</a></code>.

~kwd1

~kwd2

There are two main purposes to this package. The first is
to allow batch conversion of Genepop (Rousset 2008) input files
for use with Arlequin (Excoffier and Lischer 2010), which has a
simple GUI to analyze batch files. Two commonly used simulation
software, BottleSim (Kuo & Janzen 2003) and Easypop (Balloux
2001) produce Genepop output files that can be analyzed this
way. There are also functions to convert to and from BottleSim
format, to quickly produce allele frequency tables or to
convert a file directly for use in ordination analyses (e.g.
principal component analysis). This package also includes
functions to calculate allele rarefaction curves, confidence
intervals on heterozygosity and allelic richness with
resampling strategies (bootstrap and jackknife).

Sebastien Rioux Paquette

PopGenKit

Useful functions for (batch) file conversion and data resampling
in microsatellite datasets

jackmsat function

An internal function used by <code><a href="/link/jackmsatpop?package=PopGenKit&version=1.0" rd-options="" data-mini-rdoc="PopGenKit::jackmsatpop">jackmsatpop</a></code>. Should not be used.

jackmsat: An internal function used by `jackmsatpop`. Should not be used.

Description

Usage

Arguments

Value

See Also