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PopGenReport (version 0.96)

PopGen: A simple way to analyse and visualize population genetic data

Description

This package provides an easy way to analyse population genetic data

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Version

Install

install.packages('PopGenReport')

Monthly Downloads

1,173

Version

0.96

License

GPL

Maintainer

Bernd Gruber

Last Published

November 28th, 2012

Functions in PopGenReport (0.96)

bilby

Bilby data set

gd_kosman

Individual genetic distance calculation based on Kosman & Leonhard 2005

popgenreport

This is the main function of the package. It analyses an object of class genind and then creates a report containing the results of the analysis. There are several routines that can be optionally included in the analysis and there are multip output options including a PDF with the report, R-code and an object (allresults) containing all of the results, which can be used for further analyses.

gd_smouse

Individual genetic distance calculation based on Smouse and Peakall 1999

allele.dist

Counts and visualises allele frequencies across loci and subpopulations

PopGen-package

Analysing population genetic data within a standardised framework

read.genetable

Function to convert textfiles into a genind object (the format required for popgenreport)