costdistances

calculates a cost distance matrix, to be used with run.popgensim

Provides beginner friendly framework to analyse population genetic
data. Based on 'adegenet' objects it uses 'knitr' to create comprehensive reports on spatial genetic data.
For detailed information how to use the package refer to the comprehensive
tutorials or visit <http://www.popgenreport.org/>.

Bernd Gruber

PopGenReport

A Simple Framework to Analyse Population and Landscape Genetic
Data

Aaron Adamack

costdistances function

<dl><dt>landscape</dt>
<dd>a raster object coding the resistance of the landscape</dd>
<dt>locs</dt>
<dd>coordinates of the subpopulations</dd>
<dt>method</dt>
<dd>defines the type of cost distance, types are "least-cost", "rSPDistance" or "commute (Circuitscape type)"</dd>
<dt>NN</dt>
<dd>number of next neighbours recommendation is 8</dd></dl>

Arguments

Calculates cost distances for a given landscape (resistance matrix) — costdistances

<dl>

<dt>landscape</dt>
<dd>a raster object coding the resistance of the landscape</dd>


<dt>locs</dt>
<dd>coordinates of the subpopulations</dd>


<dt>method</dt>
<dd>defines the type of cost distance, types are "least-cost", "rSPDistance" or "commute (Circuitscape type)"</dd>


<dt>NN</dt>
<dd>number of next neighbours recommendation is 8</dd>

</dl>

costdistances: Calculates cost distances for a given landscape (resistance matrix)

Description

Usage

Value

Arguments