pairwise.propShared

Calculates proportion of shared alleles per pairs of populations based on the minima of allele frequency for each allel (then summed and averaged over loci). Returns a similarity matrix (upper diagonal of the pairwise matrix.

Provides beginner friendly framework to analyse population genetic
data. Based on 'adegenet' objects it uses 'knitr' to create comprehensive reports on spatial genetic data.
For detailed information how to use the package refer to the comprehensive
tutorials or visit <http://www.popgenreport.org/>.

Bernd Gruber

PopGenReport

A Simple Framework to Analyse Population and Landscape Genetic
Data

Aaron Adamack

pairwise.propShared function

<dl><dt>gi</dt>
<dd>a genind object with at least two populations</dd></dl>

Arguments

Calculates proportion of shared alleles per pairs of populations — pairwise.propShared

<dl>

<dt>gi</dt>
<dd>a genind object with at least two populations</dd>

</dl>

pairwise.propShared: Calculates proportion of shared alleles per pairs of populations

Description

Usage

Value

Arguments