PopPsiSeqR (version 1.0.0)

subTractor: Subtractor

Description

Subtractor

Usage

subTractor(
  data_one,
  data_two,
  treament_name = "pseudoparent",
  field = "avg_simward_AFshift",
  hoarder = FALSE
)

Value

GRanges of the difference

Arguments

data_one

first bedfile

data_two

second bedfile

treament_name

what column is the independent variable

field

what column is the variable being compared

hoarder

whether or not to retain the other data

Examples

 lab_sechellia.filename <- system.file("extdata",
"wild_sechellia.example_data.bed", package = "PopPsiSeqR")
lab.bg <- import.smvshift(lab_sechellia.filename)
lab.bg$sechellia <- "lab"
wild_sechellia.filename <- system.file("extdata",
"lab_sechellia.example_data.bed", package = "PopPsiSeqR")
wild.bg <- import.smvshift(wild_sechellia.filename)
wild.bg$sechellia <- "wild"
sub.traction <- subTractor(lab.bg, wild.bg ,treament_name = "sechellia")