PopVar

PopVar-package

The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015, tools:::Rd_expr_doi("10.2135/cropsci2015.01.0030")). A dataset 'think_barley.rda' is included for reference and examples.

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The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations,
from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic
data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all,
or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction
accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015, <doi:10.2135/cropsci2015.01.0030>).
A dataset 'think_barley.rda' is included for reference and examples.

Jeffrey Neyhart

Genomic Breeding Tools: Genetic Variance Prediction and
Cross-Validation

Tyler Tiede

Mohsen Mohammadi

Kevin Smith

PopVar-package function

Maintainer: Jeffrey Neyhart <a href="/link/neyhartje%40gmail.com?package=PopVar&version=1.3.2" data-mini-rdoc="PopVar::neyhartje@gmail.com">neyhartje@gmail.com</a> (<a href="https://orcid.org/0000-0002-1991-5310">ORCID</a>) [contributor]
Authors:<ul>
<li>Tyler Tiede <a href="/link/tyler.tiede7%40gmail.com?package=PopVar&version=1.3.2" data-mini-rdoc="PopVar::tyler.tiede7@gmail.com">tyler.tiede7@gmail.com</a></li>
</ul>Other contributors:<ul>
<li>Mohsen Mohammadi (<a href="https://orcid.org/0000-0002-4536-1200">ORCID</a>) [contributor]</li>
<li>Kevin Smith (<a href="https://orcid.org/0000-0001-8253-3326">ORCID</a>) [contributor]</li>
</ul>

Author

PopVar: Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation — PopVar-package

Maintainer: Jeffrey Neyhart <a href='mailto:neyhartje@gmail.com'>neyhartje@gmail.com</a> (<a href='https://orcid.org/0000-0002-1991-5310'>ORCID</a>) [contributor]
Authors:<ul>
<li>Tyler Tiede <a href='mailto:tyler.tiede7@gmail.com'>tyler.tiede7@gmail.com</a></li>
</ul>

Other contributors:<ul>
<li>Mohsen Mohammadi (<a href='https://orcid.org/0000-0002-4536-1200'>ORCID</a>) [contributor]</li>
<li>Kevin Smith (<a href='https://orcid.org/0000-0001-8253-3326'>ORCID</a>) [contributor]</li>
</ul>

PopVar-package: PopVar: Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation

Description

Arguments

Author

See Also