removeNoPatterns

Removes 'NoPattern' classifications from the list of pattern-match information
associated with the best pattern-matches for each contig/chunk

internal

Automate the detection of gaps and elevations in mapped sequencing
read coverage using a 2D pattern-matching algorithm. 'ProActive' detects, characterizes
and visualizes read coverage patterns in both genomes and metagenomes. Optionally,
users may provide gene annotations associated with their genome or metagenome
in the form of a .gff file. In this case, 'ProActive' will generate an additional
output table containing the gene annotations found within the detected regions of gapped
and elevated read coverage. Additionally, users can search for gene
annotations of interest in the output read coverage plots.

Jessie Maier

ProActive

Detect Elevations and Gaps in Mapped Sequencing Read Coverage

Manuel Kleiner

removeNoPatterns function

<dl><dt>bestMatchList</dt>
<dd>A list containing pattern-match information associated with
all contigs/chunks classified by `ProActive()` pattern-matching</dd></dl>

Arguments

Removes 'NoPattern' classifications from best match list — removeNoPatterns

<dl>

<dt>bestMatchList</dt>
<dd>A list containing pattern-match information associated with
all contigs/chunks classified by `ProActive()` pattern-matching</dd>

</dl>

removeNoPatterns: Removes 'NoPattern' classifications from best match list

Description

Usage

Arguments