get_r2_mcfadden

Calcuate the the adjusted McFadden's pseudo R-square between the embeddings and the labels

Probabilistic factor analysis for spatially-aware dimension reduction across multi-section spatial transcriptomics data with millions of spatial locations.
More details can be referred to Wei Liu, et al. (2023) <doi:10.1101/2023.07.11.548486>.

Wei Liu

ProFAST

Probabilistic Factor Analysis for Spatially-Aware Dimension
Reduction

Xiao Zhang

Jin Liu

get_r2_mcfadden function

<dl><dt>embeds</dt>
<dd>a n-by-q matrix, specify the embedding matrix.</dd>
<dt>y</dt>
<dd>a n-length vector, specify the labels.</dd></dl>

Arguments

Calcuate the the adjusted McFadden's pseudo R-square — get_r2_mcfadden

<dl>

<dt>embeds</dt>
<dd>a n-by-q matrix, specify the embedding matrix.</dd>


<dt>y</dt>
<dd>a n-length vector, specify the labels.</dd>

</dl>

get_r2_mcfadden: Calcuate the the adjusted McFadden's pseudo R-square

Description

Usage

Value

Arguments

Details

References