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ProteinDescriptors (version 0.1.0)

Generates Various Protein Descriptors for Machine Learning Algorithms

Description

An implementation of protein descriptors in R. These descriptors combine the advantages of being fixed length and including partial sequential effect: Various length of protein sequences are described with fixed length vectors that are suitable for machine learning algorithms, and still includes partial sequential effect.

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Install

install.packages('ProteinDescriptors')

Monthly Downloads

3

Version

0.1.0

License

BSD 3-clause License + file LICENSE

Maintainer

Berat Kurar

Last Published

March 3rd, 2016

Functions in ProteinDescriptors (0.1.0)

ShiftedDiscreteSparse

Discrete sparse descriptor.
DiscreteSparse

Discrete sparse descriptor.
DiscreteSequentialSparseFiveParts

Discrete sequential sparse descriptor with split number=5.
DiscreteSequentialSparseThreeParts

Discrete sequential sparse descriptor with split number=3.
SequentialDiscreteTd

Sequential discrete 3D descriptor with step size=2.
DiscreteSequentialSparseTwoParts

Discrete sequential sparse descriptor with split number=2.
DiscreteSequentialSparseFourParts

Discrete sequential sparse descriptor with split number=4.
SequentialSparse

Sequential sparse descriptor.
DiscreteSequentialBlosumTwoParts

Discrete sequential blosum descriptor with split number=2.
LastFirstDiscreteSparse

Last first discrete sparse descriptor.
IncrementalDiscreteSparse

Incremental discrete sparse descriptor.
SequentialDiscreteSparse

Sequential discrete sparse descriptor with step size=2.
SequentialDiscreteBlosum

Sequential discrete blosum descriptor with step size=2.
DiscreteBlosum

Discrete blosum descriptor.
SequentialTd

Sequential 3D descriptor.
DiscreteTd

Discrete 3D descriptor.
DiscreteSequentialTdTwoParts

Discrete sequential 3D descriptor with split number=2.
SequentialBlosum

Sequential blosum descriptor.