ProteomicsAnnotationHubData (version 1.2.2)

PAHD: Prepare data for inclusion into AnnotationHub

Description

Reads ProteomicsAnnotationHubData dcf files and prepares them for inclusion into AnnotationHub. See ProteomicsAnnotationDataHub{} for details and an example.

Usage

PAHD(x, resourceDir)

Arguments

x
One of mulitple ProteomicsAnnotationHubData dcf files.
resourceDir
A character containing the directory holding the files (for instance PRIDE). If missing, will be inferred from the first RDataPath field of x.

Value

A list of PAHD objects that can be used to prepare and submit data to AnnotationHub. See ProteomicsAnnotationHub() for details.

Details

Note: Current limitation is that all the files are expected to reside in a single resource directory.