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PubChemR (version 2.0.1)

Interface to the 'PubChem' Database for Chemical Data Retrieval

Description

Provides an interface to the 'PubChem' database via the PUG REST and PUG View services. This package allows users to automatically access chemical and biological data from 'PubChem', including compounds, substances, assays, and various other data types. Functions are available to retrieve data in different formats, perform searches, and access detailed annotations.

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Version

Install

install.packages('PubChemR')

Monthly Downloads

323

Version

2.0.1

License

GPL (>= 2)

Issues

3

Pull Requests

0

Stars

3

Forks

0

Maintainer

Selcuk Korkmaz

Last Published

August 21st, 2024

Functions in PubChemR (2.0.1)

get_sids

Retrieve Substance IDs (SIDs) from PubChem
get_synonyms

Retrieve Synonyms from PubChem
get_pug_view

Retrieve PUG View Data from PubChem
sectionList

List Available Section/Subsections
section

Extract Sections from Pug View Request
retrieve

Retrieve Information from PubChem Instances
synonyms

Getter function for 'Synonyms'
pubChemData

Retrieve Raw Data from PUG REST Object
get_compounds

Retrieve Compounds from PubChem
PubChemR-classes

PubChemInstanceList and PubChemInstance Classes
PugView-classes

Classes for Pug View Request
get_aids

Retrieve Assay IDs (AIDs) from PubChem
AIDs-SIDs-CIDs

Assay, Compound, and Substance Identifiers
get_all_sources

Retrieve All Sources from PubChem
get_properties

Retrieve Compound Properties from PubChem
get_assays

Retrieve Assays from PubChem
download

Download Content from PubChem and Save to a File
get_cids

Retrieve Compound IDs (CIDs) from PubChem
get_pug_rest

Retrieve Data from PubChem PUG REST API
get_sdf

Retrieve/Save SDF Data from PubChem
get_substances

Retrieve Substances from PubChem
request_args

Retrieve Function Inputs
instance

Retrieve Information for Requested Instances