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Publish

R package Publish

Installation

To install the development version of Publish run the following commands from within R

library(devtools)
install_github('tagteam/Publish')

Trouble shooting

To install a package from github you need a program to unzip the download. If you don't have such a program and the install_github above command failed, then you should try

library(devtools)
options(unzip="internal")
install_github('tagteam/Publish')

Examples

Copy Link

Version

Install

install.packages('Publish')

Monthly Downloads

7,719

Version

2017.10.24

License

GPL (>= 2)

Maintainer

Thomas Alexander Gerds

Last Published

October 23rd, 2017

Functions in Publish (2017.10.24)

SpaceT

A study was made of all 26 astronauts on the first eight space shuttle flights (Bungo et.al., 1985). On a voluntary basis 17 astronauts consumed large quantities of salt and fluid prior to landing as a countermeasure to space deconditioning, while nine did not.
Units

Add units to data set
coxphSeries

Run a series of Cox regression models
fixRegressionTable

Expand regression coefficient table
ci.mean

Compute mean values with confidence intervals
ci.mean.default

Compute mean values with confidence intervals
CiTable

CiTable data
Diabetes

Diabetes data of Dr John Schorling
followupTable

Summary tables for a given followup time point.
formatCI

Formatting confidence intervals
glmSeries

Run a series of generalized linear regression analyses
labelUnits

labelUnits
print.ci

Print confidence intervals
print.table2x2

print results of 2x2 contingency table analysis
publish.glm

Tabulize regression coefficients with confidence intervals and p-values.
publish.htest

Pretty printing of test results.
parseInteractionTerms

Parse interaction terms
plot.ci

Plot confidence intervals
publish.ci

Publish tables with confidence intervals
publish

Publishing tables and figures
publish.Score

Publish predictive accuracy results
publish.summary.aov

Format summary table of aov results
publish.survdiff

Alternative summary of survdiff results
table2x2

2x2 table calculus for teaching
trace

trace data
lazyFactorCoding

Efficient coding of factor levels
org

Wrapper function for publish with output format org
print.univariateTable

Printing univariate tables
pubformat

Format numbers for publication
publish.coxph

Tabulize hazard ratios with confidence intervals and p-values.
summary.ci

Summarize confidence intervals
summary.regressionTable

Formatting regression tables
publish.matrix

Publishing a matrix in raw, org, latex, or muse format
publish.riskRegression

Publishing results of riskRegression
summary.univariateTable

Preparing univariate tables for publication
sutable

Fast summary of a univariate table
regressionTable

Regression table
spaghettiogram

Spaghettiogram
plot.regressionTable

Plotting regression coefficients with confidence limits
plotConfidence

Plot confidence intervals
publish.CauseSpecificCox

Tabulizing cause-specific hazard ratio from all causes with confidence limits and Wald test p-values.
publish.MIresult

Present logistic regression and Cox regression obtained with mitools::MIcombine based on smcfcs::smcfcs multiple imputation analysis
specialFrame

Special frame
stripes

Background and grid color control.
univariateTable

Univariate table