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Publish

R package Publish

Installation

To install the development version of Publish run the following commands from within R

library(devtools)
install_github('tagteam/Publish')

Trouble shooting

To install a package from github you need a program to unzip the download. If you don't have such a program and the install_github above command failed, then you should try

library(devtools)
options(unzip="internal")
install_github('tagteam/Publish')

Examples

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Version

Install

install.packages('Publish')

Monthly Downloads

7,719

Version

2020.12.23

License

GPL (>= 2)

Maintainer

Thomas Alexander Gerds

Last Published

January 5th, 2021

Functions in Publish (2020.12.23)

Publish-package

Publish package
ci.mean.default

Compute mean values with confidence intervals
Units

Add units to data set
coxphSeries

Run a series of Cox regression models
fixRegressionTable

Expand regression coefficient table
ci.mean

Compute mean values with confidence intervals
CiTable

CiTable data
Diabetes

Diabetes data of Dr John Schorling
acut

Automatic selection and formatting of breaks in cut
SpaceT

A study was made of all 26 astronauts on the first eight space shuttle flights (Bungo et.al., 1985). On a voluntary basis 17 astronauts consumed large quantities of salt and fluid prior to landing as a countermeasure to space deconditioning, while nine did not.
followupTable

Summary tables for a given followup time point.
lazyFactorCoding

Efficient coding of factor levels
lazyDateCoding

Efficient coding of date variables
glmSeries

Run a series of generalized linear regression analyses
labelUnits

labelUnits
plot.regressionTable

Plotting regression coefficients with confidence limits
plot.ci

Plot confidence intervals
org

Wrapper function for publish with output format org
parseInteractionTerms

Parse interaction terms
publish.CauseSpecificCox

Tabulizing cause-specific hazard ratio from all causes with confidence limits and Wald test p-values.
pubformat

Format numbers for publication
print.table2x2

print results of 2x2 contingency table analysis
print.univariateTable

Printing univariate tables
publish.MIresult

Present logistic regression and Cox regression obtained with mitools::MIcombine based on smcfcs::smcfcs multiple imputation analysis
formatCI

Formatting confidence intervals
publish

Publishing tables and figures
plot.subgroupAnalysis

plot.subgroupAnalysis
plotConfidence

Plot confidence intervals
print.ci

Print confidence intervals
print.subgroupAnalysis

Printing univariate tables
publish.matrix

Publishing a matrix in raw, org, latex, or muse format
publish.htest

Pretty printing of test results.
publish.riskRegression

Publishing results of riskRegression
publish.summary.aov

Format summary table of aov results
publish.survdiff

Alternative summary of survdiff results
regressionTable

Regression table
publish.coxph

Tabulize hazard ratios with confidence intervals and p-values.
subgroupAnalysis

Subgroup Analysis - Interactions and estimates
splinePlot.lrm

Plot predictions of logistic regression
summary.regressionTable

Formatting regression tables
summary.ci

Summarize confidence intervals
summary.subgroupAnalysis

summary.subgroupAnalysis
stripes

Background and grid color control.
publish.glm

Tabulize regression coefficients with confidence intervals and p-values.
publish.Score

Publish predictive accuracy results
spaghettiogram

Spaghettiogram
trace

trace data
publish.ci

Publish tables with confidence intervals
table2x2

2x2 table calculus for teaching
summary.univariateTable

Preparing univariate tables for publication
sutable

Fast summary of a univariate table
specialFrame

Special frame
univariateTable

Univariate table
traceR

traceR data