PureCN (version 1.0.3)

createCurationFile: Create file to curate PureCN results

Description

Function to create a CSV file that can be used to mark the correct solution in the output of a runAbsoluteCN() run.

Usage

createCurationFile(file.rds, overwrite.uncurated = TRUE)

Arguments

file.rds

Output of the runAbsoluteCN() function, serialized with saveRDS()

overwrite.uncurated

Overwrite existing files unless flagged as "Curated".

Value

• A data.frame with the tumor purity and ploidy of the maximum likelihood solution

Examples

data(purecn.example.output)
file.rds <- 'Sample1_PureCN.rds'
saveRDS(purecn.example.output, file=file.rds)
createCurationFile(file.rds)

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