fs_VHX_BPD

The posterior mean of a multinomial-Dirichlet model with uniform prior fit to
data on allele prevalence in initial episodes of ys_VHX_BPD. Because the
model is fit to allele prevalence (observed) not allele frequency ( requires
integrating-out unknown multiplicities of infection) it is liable to
underestimate the frequencies of common alleles and overestimate those of
rare but detected alleles.

datasets

Plot malaria parasite genetic data on two or more episodes.
Compute per-person posterior probabilities that each
Plasmodium vivax (Pv) recurrence is a recrudescence, relapse,
or reinfection (3Rs) using per-person P. vivax genetic data on two or
more episodes and a statistical model described in
Taylor, Foo and White (2022) <doi:10.1101/2022.11.23.22282669>.
Plot per-recurrence posterior probabilities.

Aimee Taylor

Pv3Rs

Estimate the Cause of Recurrent Vivax Malaria using Genetic Data

Yong See Foo

Tymoteusz Kwiecinski

Duncan Murdoch

Mans Magnusson

Institut Pasteur 

European Union, Project 101110393 

fs_VHX_BPD function

A list of nine markers; for each marker a named vector of allele frequencies
that sum to one.

Format

Allele frequencies computed using example Plasmodium vivax data — fs_VHX_BPD

Allele frequencies computed using example Plasmodium vivax data

fs_VHX_BPD: Allele frequencies computed using example Plasmodium vivax data

Description

Usage

Arguments

Format