read_xponent_format

Speeds up the process of loading raw data from MBA (Multiplex Bead Assay) examinations, performs quality control checks, and automatically normalises the data, preparing it for more advanced, downstream tasks. The main objective of the package is to create a simple environment for a user, who does not necessarily have experience with R language. The package is developed within the project of the same name - 'PvSTATEM', which is an international project aiming for malaria elimination.

Tymoteusz Kwiecinski

PvSTATEM

Reading, Quality Control and Preprocessing of MBA (Multiplex
Bead Assay) Data

Jakub Grzywaczewski

Mateusz Nizwantowski

Przemyslaw Biecek

Nuno Sepulveda

read_xponent_format function

<dl><dt>path</dt>
<dd>Path to the xPONENT file</dd>
<dt>exact_parse</dt>
<dd>Whether to parse the file exactly or not
Exact parsing means that the batch, calibration and assay metadata will be parsed as well</dd>
<dt>encoding</dt>
<dd>Encoding of the file</dd>
<dt>separator</dt>
<dd>Separator for the CSV values</dd>
<dt>verbose</dt>
<dd>Whether to print the progress. Default is <code>TRUE</code></dd></dl>

Arguments

Read the xPONENT format data — read_xponent_format

<dl>

<dt>path</dt>
<dd>Path to the xPONENT file</dd>


<dt>exact_parse</dt>
<dd>Whether to parse the file exactly or not
Exact parsing means that the batch, calibration and assay metadata will be parsed as well</dd>


<dt>encoding</dt>
<dd>Encoding of the file</dd>


<dt>separator</dt>
<dd>Separator for the CSV values</dd>


<dt>verbose</dt>
<dd>Whether to print the progress. Default is <code>TRUE</code></dd>

</dl>

Read the xPONENT format data

read_xponent_format: Read the xPONENT format data

Description

Usage

Arguments