Pviz (version 1.6.2)

plot_clade: Plot frequency of response for a single clade.

Description

Plot an axis and the frequency of response of a single selected clade.

Usage

plot_clade(restab, clade, sequence = NULL, from = 0, to = max(restab$position), ...)

Arguments

restab

A data.frame. The result of a peptide microarray analysis, as returned by pepStat's restab function.

clade

A character. The clade to plot.

sequence

An optional character or AAString. The sequence of the ProteinSequenceTrack to plot. It should be the sequence of the reference genome used in the peptideSet that generated the restab.

from

A numeric, the start coordinate of the plot.

to

A numeric, the end coordinate of the plot.

...

Aditional arguments to be passed to plotTracks.

See Also

restab, plot_inter, plotTracks

Examples

if(require(pepDat)){
  data(restab)
  plot_clade(restab, clade = c("A", "M"))
}