LGG150


     An example data set of read counts from chromosomes 7-10 of sample
     LGG150, contained within a <code><a rd-options="" href="/link/QDNAseqReadCounts?package=QDNAseq&version=1.8.0" data-mini-rdoc="QDNAseq::QDNAseqReadCounts">QDNAseqReadCounts</a></code> object
 

datasets

Quantitative DNA sequencing for chromosomal aberrations.
The genome is divided into non-overlapping fixed-sized bins, number of
sequence reads in each counted, adjusted with a simultaneous
two-dimensional loess correction for sequence mappability and GC
content, and filtered to remove spurious regions in the genome.
Downstream steps of segmentation and calling are also implemented via
packages DNAcopy and CGHcall, respectively.

Daoud Sie

QDNAseq

Quantitative DNA sequencing for chromosomal aberrations

LGG150 function

An example data set of read counts from chromosomes 7-10 of sample
     LGG150, contained within a <code><a href="QDNAseqReadCounts" rd-options="">QDNAseqReadCounts</a></code> object

LGG150: LGG150 chromosomes 7-10

Description

Arguments