QDNAseq (version 1.8.0)

frequencyPlot: Plot copy number aberration frequencies

Description

Plot copy number aberration frequencies.

Usage

frequencyPlot(x, y, ...)

Arguments

x

A QDNAseqCopyNumbers object with calls data.

y

missing

...

...

Examples

data(LGG150)
readCounts <- LGG150
readCountsFiltered <- applyFilters(readCounts)
readCountsFiltered <- estimateCorrection(readCountsFiltered)
copyNumbers <- correctBins(readCountsFiltered)
copyNumbersNormalized <- normalizeBins(copyNumbers)
copyNumbersSmooth <- smoothOutlierBins(copyNumbersNormalized)
copyNumbersSegmented <- segmentBins(copyNumbersSmooth)
copyNumbersSegmented <- normalizeSegmentedBins(copyNumbersSegmented)
copyNumbersCalled <- callBins(copyNumbersSegmented)
frequencyPlot(copyNumbersCalled)