noisePlot

noisePlot,QDNAseqReadCounts,missing-method

A <code><a rd-options="" href="/link/QDNAseqReadCounts?package=QDNAseq&version=1.8.0" data-mini-rdoc="QDNAseq::QDNAseqReadCounts">QDNAseqReadCounts</a></code> object.

Further arguments to <code><a rd-options="graphics" href="/link/plot?package=QDNAseq&version=1.8.0&to=graphics" data-mini-rdoc="graphics::plot">plot</a></code> and
        <code><a rd-options="graphics" href="/link/text?package=QDNAseq&version=1.8.0&to=graphics" data-mini-rdoc="graphics::text">text</a></code>.


    Plot noise as a function of sequence depth.


hplot

Quantitative DNA sequencing for chromosomal aberrations.
The genome is divided into non-overlapping fixed-sized bins, number of
sequence reads in each counted, adjusted with a simultaneous
two-dimensional loess correction for sequence mappability and GC
content, and filtered to remove spurious regions in the genome.
Downstream steps of segmentation and calling are also implemented via
packages DNAcopy and CGHcall, respectively.

Daoud Sie

QDNAseq

Quantitative DNA sequencing for chromosomal aberrations

noisePlot function

A <code><a href="QDNAseqReadCounts" rd-options="">QDNAseqReadCounts</a></code> object.

Further arguments to <code><a href="plot" rd-options="graphics">plot</a></code> and
        <code><a href="text" rd-options="graphics">text</a></code>.

Plot noise as a function of sequence depth.

noisePlot: Plot noise as a function of sequence depth

Description

Usage

Arguments

Examples