QTL.gCIMapping.GUI (version 2.1.1)

WangF: To perform QTL mapping with wang method

Description

Genome-wide Composite Interval Mapping

Usage

WangF(pheRaw,genRaw,mapRaw1,yygg1,flagRIL,cov_en,Population,WalkSpeed,CriLOD)

Arguments

pheRaw

phenotype matrix.

genRaw

genotype matrix.

mapRaw1

linkage map matrix.

yygg1

the transformed covariate matrix .

flagRIL

if RIL or not.

cov_en

raw covariate matrix.

Population

population flag.

WalkSpeed

Walk speed for Genome-wide Scanning.(WalkSpeed=1).

CriLOD

Critical LOD scores for significant QTL (CriLOD=2.5).

Examples

# NOT RUN {
data(gen)
data(phe)
data(map)
wf<-WangF(pheRaw=phe,genRaw=gen,mapRaw1=map,yygg1=NULL,
flagRIL=0,cov_en=NULL,Population="DH",WalkSpeed=1,CriLOD=2.5)
# }