QTL.gCIMapping.GUI (version 2.1.1)

WangS: The second step of wang method

Description

Genome-wide Composite Interval Mapping

Usage

WangS(flag,CriLOD,NUM,pheRaw,chrRaw_name,yygg,mx,phe,chr_name,gen,
mapname,CLO)

Arguments

flag

fix or random model.

CriLOD

LOD score.

NUM

The number of trait.

pheRaw

Raw phenotype matrix.

chrRaw_name

raw chromosome name.

yygg

covariate matrix.

mx

raw genotype matrix.

phe

phenotype matrix.

chr_name

chromosome name.

gen

genotype matrix.

mapname

linkage map matrix.

CLO

Number of CPUs.

Examples

# NOT RUN {
data(gen)
data(phe)
data(map)
W1re<-WangF(pheRaw=phe,genRaw=gen,mapRaw1=map,yygg1=NULL,
flagRIL=0,cov_en=NULL,Population="DH",WalkSpeed=1,CriLOD=2.5)
###
ws<-WangS(flag=1,CriLOD=2.5,NUM=1,pheRaw=phe,
chrRaw_name=W1re$chrRaw_name,yygg=W1re$yygg,mx=W1re$mx,
phe=W1re$phe,chr_name=W1re$chr_name,gen=W1re$gen,
mapname=W1re$mapname,CLO=1)
# }