QTL.gCIMapping (version 2.0)

WenF: To perform QTL mapping with Wen method

Description

An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F2

Usage

WenF(pheRaw,genRaw,mapRaw1,yygg1,cov_en,WalkSpeed,CriLOD,dir)

Arguments

pheRaw

phenotype matrix.

genRaw

genotype matrix.

mapRaw1

linkage map matrix.

yygg1

the transformed covariate matrix .

cov_en

raw covariate matrix.

WalkSpeed

Walk speed for Genome-wide Scanning.(WalkSpeed=1).

CriLOD

Critical LOD scores for significant QTL (CriLOD=2.5).

dir

file path in your computer.

Examples

# NOT RUN {
G2=data(genf2)
P2=data(phef2)
M2=data(mapf2)
WenF(phef2,genf2,mapf2,yygg1=NULL,cov_en=NULL,1,2.5,dir=tempdir())
# }