QTL.gCIMapping (version 3.4)

WangF: To perform QTL mapping with wang method

Description

To perform QTL mapping with wang method

Usage

WangF(
  pheRaw = NULL,
  genRaw = NULL,
  mapRaw1 = NULL,
  yygg1 = NULL,
  flagRIL = NULL,
  cov_en = NULL,
  Population = NULL,
  WalkSpeed = NULL,
  CriLOD = NULL
)

Arguments

pheRaw

phenotype matrix.

genRaw

genotype matrix.

mapRaw1

linkage map matrix.

yygg1

the transformed covariate matrix.

flagRIL

if RIL or not.

cov_en

raw covariate matrix.

Population

population flag.

WalkSpeed

Walk speed for Genome-wide Scanning.

CriLOD

Critical LOD scores for significant QTL.

Value

a list

Examples

# NOT RUN {
data(DHdata)
readraw<-Readdata(file=DHdata,fileFormat="GCIM",
method="GCIM",filecov=NULL,MCIMmap=NULL,MultiEnv=FALSE)
DoResult<-Dodata(fileFormat="GCIM",Population="DH",
method="GCIM",Model="Random",readraw,MultiEnv=FALSE)
ws<-WangF(pheRaw=DoResult$pheRaw,genRaw=DoResult$genRaw,
mapRaw1=DoResult$mapRaw1,yygg1=DoResult$yygg1,
flagRIL=DoResult$flagRIL,cov_en=DoResult$cov_en,
Population="DH",WalkSpeed=1,CriLOD=2.5)
# }